The GATK Best Practices for variant calling on RNAseq | RNA-Seq Blog
Please update your GATK - Important information about GATK 4.2.6.1 – GATK
The GATK workflow for NGS data analysis. | Download Scientific Diagram
GATK: the best practice for genotype calling in a non-model organism - Dmytro Kryvokhyzha
Germline short variant discovery (SNPs + Indels) - Legacy GATK Forum
GATK Variant Calling Best Practices. The HaplotypeCaller takes in... | Download Scientific Diagram
Variant Calling Pipeline using GATK4 – Genomics Core at NYU CGSB
DP for each variant bulk is skewed towards 50 and multiples of 50 – GATK
🗓️ DRAGEN-GATK Webinar [Oct. 21, 2022] – GATK
Somatic short variant discovery SNVs Indels - Legacy GATK Forum
GitHub - broadinstitute/GATK-for-Microbes
GATK 4.3.0.0 Mutect2 fail to call variant – GATK
Calling variants on cohorts of samples using the HaplotypeCaller in GVCF mode - Legacy GATK Forum
GATK
A beginners guide to Call SNPs and indels: Part II
Whole Genome Germline Single Sample Overview | WARP
Protocol for unbiased, consolidated variant calling from whole exome sequencing data - ScienceDirect
GitHub - crukci-bioinformatics/gatk-tools: Utilities for processing sequencing data and genomic variants using GATK
Amazon.fr - Genomics in the Cloud: Using Docker, GATK, and WDL in Terra - Auwera, Geraldine van der, O'Connor, Brian D. - Livres
Introducing GATK "Biggest Practices" for Joint Calling Supersized Cohorts – GATK
Somatic Variant Pipeline | Plataforma Andaluza de Medicina Computacional
1. Introduction to GATK Workshop - YouTube
Broad Institute to release Genome Analysis Toolkit 4 (GATK4) as open source resource to accelerate research | Broad Institute
Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework | BMC Genomics | Full Text
Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment | Scientific Reports
038. Run the germline GATK Best Practices Pipeline for 5 per genome - Legacy GATK Forum
